M. Arguello Casteleiro, D. Maseda-Fernandez, G. Demetriou, W. Read, M.J. Fernandez-Prieto, J. Des-Diz, G. Nenadic, J. Keane, and R. Stevens (April 2017). A case study on Sepsis using PubMed and Deep Learning for Ontology Learning. In Proceedings of Informatics for Health 2017. To be published by IOS Press in "Studies in Health Technology and Informatics".
M. Arguello Casteleiro, M.J. Fernandez-Prieto, G. Demetriou, N. Maroto, W. Read, D. Maseda-Fernandez, J. Des-Diz, G. Nenadic, J. Keane, and R. Stevens. (Dec 2016). Ontology Learning with Deep Learning: a case study on Patient Safety using PubMed. In Proceedings of Semantic Web Applications and Tools for the Life Sciences (SWAT4LS 2016). To be published as CEUR Vol.
Additional material: owl files
M. Arguello Casteleiro, G. Demetriou, W.J. Read, M.J. Fernandez-Prieto, D. Maseda-Fernandez, G. Nenadic, J. Klein, J.A. Keane, R. Stevens. (Sept 2016). Deep Learning meets Semantic Web: A feasibility study with the Cardiovascular Disease Ontology and PubMed citations. In Proceedings of the 7th Workshop on Ontologies and Data in Life Sciences, organized by the GI Workgroup Ontologies in Biomedicine and Life Sciences (OBML). CEUR Vol. 1692.
Using gensim for LSA and LDA. Generating word embeddings with Skip-gram and CBOW.
Creating ontologies with Protégé and querying them in SPARQL. Live demo: sysVASC Proteasix. Demo: Two case studies about Ontology Learning with Skip-gram and CBOW.